Stratum adjusted correlation coefficient
WebPrism can perform correlation analyses from XY, Column, and Multiple Variables data tables. Click the Analyze button and choose correlation. ... You should only choose a one … Web13 Apr 2024 · In this paper, a GPU-accelerated Cholesky decomposition technique and a coupled anisotropic random field are suggested for use in the modeling of diversion tunnels. Combining the advantages of GPU and CPU processing with MATLAB programming control yields the most efficient method for creating large numerical model random fields. Based …
Stratum adjusted correlation coefficient
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Web10 Jun 2024 · In addition, we also determined the stratum-adjusted correlation coefficient (SCC) that takes into account the distance-dependence effect of contact maps by stratifying them according to the genomic distance , and obtained 0.7 for GM-Sim/GM-Exp, and 0.66 for GM-Sim/IMR-Exp. Therefore, SCC analysis also validates our model’s ability in reproducing … Web(E) The model-inferred contact matrix of chromosome 20 has a Pearson, distance-corrected Pearson, and stratum-adjusted correlation with Hi-C respectively equal to r = 0.97, r′ = …
Web12 Mar 2024 · The global contact maps obtained for replicates were highly reproducible as determined by HiCRep (median stratum-adjusted correlation coefficient [SCC] = 0.83), and the contact maps for the same adipose depots were also highly similar between wild boars and Bama pigs (median SCC = 0.82) (Fig. 1c). Web1 Dec 2024 · We applied 1D metrics to Hi-C samples from these three datasets and calculated the pairwise Pearson correlation coefficient among them, followed by hierarchical clustering. The 1D metrics could classify Hi-C samples ... (stratum-adjusted correlation coefficient ), a designed score (not 1D metric) for measuring similarities …
Web8 Apr 2024 · To quantitatively evaluate the performances of the three models, we used four metrics, including Pearson correlation coefficient, the stratum adjusted correlation … WebIn statistics, standardized (regression) coefficients, also called beta coefficients or beta weights, are the estimates resulting from a regression analysis where the underlying data …
Web7 Feb 2024 · Stratum-adjusted correlation coefficients (SCC) were calculated for each pair of replicates (same- or cross-enzyme) on Hi-C contact matrices estimated by four …
Web26 Sep 2024 · koushik-kumar changed the title Stratum adjusted correlation coefficient evaluation Stratum adjusted correlation coefficient (SCC) Evaluation on Sep 26, 2024. … insert image angularWebWhen there is more than one stratum, this CMH statistic becomes a stratum-adjusted correlation statistic. ANOVA (Row Mean Scores) Statistic The ANOVA statistic can be … modern steak calgary menuWeb2 Apr 2024 · It then calculates a split score for each pair of TADs from the two samples based on the corner split ratio by default, and further allows users to calculate the split … modern steel alloys used in firearmsWeb2 Aug 2024 · A correlation coefficient is a number between -1 and 1 that tells you the strength and direction of a relationship between variables. In other words, it reflects how … modern steam radiators for saleWeb25 Apr 2024 · hicrep measures similarity between Hi-C samples by computing a stratum-adjusted correlation coefficient (SCC). In this implementation, the SCC is computed … modern steelhead flies pdfWeb4 Aug 2024 · We present HiCRep, a framework for assessing the reproducibility of Hi-C data that systematically accounts for these features. In particular, we introduce a novel similarity measure, the stratum... modern steep tea companyWeb6 Sep 2024 · Contact matrices were strongly correlated between replicates (stratum-adjusted correlation coefficient > 0.9; Figure S3 A). The endocrine cell types (alpha and beta) were more similar to each other than to acinar cells in terms of contact frequency, as expected from their developmental origin and functional properties (Figure S3 A). We … insert image into text box powerpoint